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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0034s0082.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 424aa MW: 47286.9 Da PI: 10.4129 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.3 | 2.8e-11 | 25 | 72 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s y+GV+ +++W+A+I + slg + t+eeAa+a+++ar + Bobra.0034s0082.1.p 25 SIYRGVTLFAPTQKWRAQISFG-----GETTSLGDYATEEEAARAYDKARIHF 72 579***99999*******9993.....4**********************866 PP | |||||||
2 | AP2 | 22.6 | 2.7e-07 | 117 | 161 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 s+y+G + ++g+W A+I + +++lg + t+e+Aa+a+++a+ Bobra.0034s0082.1.p 117 SKYRGASLLQQTGKWHAQINIE-----KDQIHLGFYFTEEGAARAYDRAA 161 78999999999********996.....5********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence |
MEGRSKRPKT ITSQDGTPPK RPRSSIYRGV TLFAPTQKWR AQISFGGETT SLGDYATEEE 60 AARAYDKARI HFKKMDNLNF GVNAYSAEEI VFLQGKLWEE VREWLRQGAR KKPTSSSKYR 120 GASLLQQTGK WHAQINIEKD QIHLGFYFTE EGAARAYDRA AIIKALNDNA RKVSLNFPIK 180 NYEEDLPILC HIPLRKMSED VPNDKKKDLW EMLDNGFHGR MEAGFKPLSP EHVKRIDLLK 240 QNAVVFQPKT VALSCEQASI EGSPAGPKSP LKRSQSPFVS AVGPVPVVVT PSKPIRGLQQ 300 SRAATSPPMS PSPCKKPIPR RTAARHLKFS DGERDTVKDP KKALYDDPET EVTASKAKRV 360 LETPDTPDTS KRGRRPVSEP DAPSPPSSES PSEAPSPPKY EATLRHARRM RRKSLMPCRA 420 PVS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 5e-17 | AP2 family protein |