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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA66784.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24512.3 Da PI: 9.9109 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.1 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngi+KKA E+SvLCda+v+++ifss gk+ ey+s PKA66784.1 9 KRIENSTNRQVTFSKRRNGIMKKAREISVLCDAQVSLVIFSSLGKMSEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 80.4 | 4.3e-27 | 71 | 161 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq++sgk+l++ak+e+l+ e++++kke++n+q e+Rhl+Ged++sL+ keL +e++L+++l ++R+k++++l+ l+kke +l+eenk+L+ PKA66784.1 71 YQQNSGKKLWDAKHENLSAEIDRIKKENDNMQIELRHLKGEDVNSLNPKELIPIEEALQNGLASVREKQMDFLK----MLKKKEMMLEEENKRLT 161 899*******************************************************************9986....59***********9996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MGRGKIEIKR IENSTNRQVT FSKRRNGIMK KAREISVLCD AQVSLVIFSS LGKMSEYCSP 60 STTLSKMLER YQQNSGKKLW DAKHENLSAE IDRIKKENDN MQIELRHLKG EDVNSLNPKE 120 LIPIEEALQN GLASVREKQM DFLKMLKKKE MMLEEENKRL TYLLHHQQLA MEGSMRDLDI 180 SYHQKDREFA SQMPMTFRLQ PIQPNLQGNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 5e-80 | MIKC_MADS family protein |