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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA66596.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22762.8 Da PI: 6.6309 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.5 | 4.7e-15 | 1 | 31 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA EL vLCdaev++i+fsstgk+ ey+s PKA66596.1 1 MKKARELTVLCDAEVSLIMFSSTGKFSEYCS 31 8****************************96 PP | |||||||
2 | K-box | 91.1 | 2e-30 | 43 | 141 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yq+ s +l++a++e++q+ l+ Lk+ +++L++e+Rh++GedL+ L++keL+ Leq+++++lk +R++K++++++q+++ +kk k+ +e++k L ++le PKA66596.1 43 YQQVSAINLWSAQYEKMQNTLKHLKDINDELRKEIRHRMGEDLDGLDIKELRGLEQNMDEALKIVRNRKYHVITTQTDTFKKKLKNSEETHKGLLRELE 141 78889999**************************************************************************************99886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MKKARELTVL CDAEVSLIMF SSTGKFSEYC SPSADTKSMF DRYQQVSAIN LWSAQYEKMQ 60 NTLKHLKDIN DELRKEIRHR MGEDLDGLDI KELRGLEQNM DEALKIVRNR KYHVITTQTD 120 TFKKKLKNSE ETHKGLLREL EMNEEQAMFG YVEDDPSSSY EGALALANGG PHIYAFRVQP 180 SQPNLHGMGC RSHDLRLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-50 | MIKC_MADS family protein |