PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65473.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

AP2

Protein Properties

Length: 354aa MW: 39994.3 Da PI: 7.9977

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.4	4.8e-15	46	105	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg + +e Aa a++ a++k++g PKA65473.1 46 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYHDEEAAAHAYDLAALKYWG 105 57*****************999955656446***********************98 PP
2	AP2	51	3.5e-16	148	199	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I + g +k+ +lg+f t eeAa a++ a+ +++g PKA65473.1 148 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTFATQEEAATAYDMAAIEYRG 199 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MAKRKQSSSA SSNEEDGGKI GSSDRIAKAK RTRRRAPRDS SSQRSSIYRG VTRHRWTGRY 60 EAHLWDKNCW NESQNKKGRQ VYLGAYHDEE AAAHAYDLAA LKYWGQDTIL NFPLSNYQEQ 120 LKEMECQTKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG KWEARIGRVF GNKYLYLGTF 180 ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YLKLLRPNPA FSEDISGEPM NLSSAAAAAA 240 PSSGRAHDRR RRFRKLPPQS HEAGEQAATP SAFGLLFQSS EFKEMLERTT VIAEEALPES 300 PPESDGKPPR CSFPDDIQTY FDCHDSGTFD EGEDTIFAEL GAIEAPIFQY QFEI

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MAKRKQSSSA SSNEEDGGKI GSSDRIAKAK RTRRRAPRDS SSQRSSIYRG VTRHRWTGRY  60
EAHLWDKNCW NESQNKKGRQ VYLGAYHDEE AAAHAYDLAA LKYWGQDTIL NFPLSNYQEQ  120
LKEMECQTKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG KWEARIGRVF GNKYLYLGTF  180
ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YLKLLRPNPA FSEDISGEPM NLSSAAAAAA  240
PSSGRAHDRR RRFRKLPPQS HEAGEQAATP SAFGLLFQSS EFKEMLERTT VIAEEALPES  300
PPESDGKPPR CSFPDDIQTY FDCHDSGTFD EGEDTIFAEL GAIEAPIFQY QFEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	253	DRRRRF
2	248	256	DRRRRFRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-102	AP2 family protein