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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA65030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 515aa MW: 58385.8 Da PI: 9.8562 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.6 | 1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ PKA65030.1 9 KRIESTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 82.7 | 8e-28 | 58 | 125 | 33 | 100 |
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++Rhl+G++L+sLs+keL+qLe++Le+++++iRskK+e+l+++ie++qk+e elq en++Lr+k++e PKA65030.1 58 SNNRHLMGDSLSSLSIKELKQLESRLERGITRIRSKKHEMLFAEIEYMQKRETELQTENMYLRTKMAE 125 578**************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence |
MGRGKIEIKR IESTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60 RHLMGDSLSS LSIKELKQLE SRLERGITRI RSKKHEMLFA EIEYMQKRET ELQTENMYLR 120 TKMAENERAQ EANIVANAAA LGTLPTFDSR NYYHVNMLEA EASYPHTKHK KVAGGSRALP 180 RLHPTCRHLR SAPAATSLSF RSLFIQFLGS IFIEKGEVGG GMDERIPPGA YFQYQSALQL 240 PHQSVRPPSA SFDKERYLAE LLAERQKLVP FVQVVPFCSR LLNQEILRVS SYVPNQNFAD 300 HERFEQSSPF RLAGHSSNGG PVKLEGWSAM QTEENRYFPR IGTIQAHPVA WNGVPGVTSI 360 PVLKKVVRLD VPVDKYPSYN FVGRLLGPRG NSLKRVEATT HCRVYIRGRG SVKDSIKEEK 420 LRDKPGYEHL NEPLHVLVEA EFPADVIDGQ LNKTVEILEG LLKPVEDESM DMYKKQQLRE 480 LAMLNGTLRE DSPYNMSPSA SPFSSNGMKR AKTGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 5e-63 | MIKC_MADS family protein |