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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA64068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28650.2 Da PI: 6.89 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83 | 1.8e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vL+da+v +++fs++gk+y+y+s PKA64068.1 9 KRIENPTNRQVTFSKRRGGLLKKAHELAVLTDAQVGLVVFSTSGKMYDYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 78 | 2.4e-26 | 81 | 172 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ +++l+ e+++++ e++ Lq +++++ Ge+L+ L++++L+qLe++Le s++k+R +K++ll++q+e+l++ke+ l+++n++L + l+e PKA64068.1 81 QDHSSQQQLYCEITRIRHETDRLQATIKQFTGEELSGLTINDLNQLEDHLEFSVNKVRFRKHQLLHQQLENLRRKEHILEDQNNYLCRALAE 172 67788999******************************************************************************998765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MGRGKIEIKR IENPTNRQVT FSKRRGGLLK KAHELAVLTD AQVGLVVFST SGKMYDYCSP 60 ASSMREIIER YLKATNAHFD QDHSSQQQLY CEITRIRHET DRLQATIKQF TGEELSGLTI 120 NDLNQLEDHL EFSVNKVRFR KHQLLHQQLE NLRRKEHILE DQNNYLCRAL AEHHVAMEQQ 180 QAADHYEENK AREMGFLHEP SSLIGNFLSS VADDSAGNLL QLGPQVHGFQ LQPTQPNLQD 240 PALHGYALQL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 3e-57 | MIKC_MADS family protein |