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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA62862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | AP2 | ||||||||
Protein Properties | Length: 487aa MW: 53661.7 Da PI: 6.7148 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 162 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PKA62862.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211 78*******************......55************************998 PP | |||||||
2 | AP2 | 40.4 | 7.4e-13 | 254 | 303 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ + + PKA62862.1 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIQCN 303 89********.7******5553..2.26**********99*********98765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence |
MVLDLNVASG GESSSTPERL LHERSEDGRM ADSGTSNSSV LNAEEYSSIA DEGSCSTRPA 60 FRFGILKDAG GGEEVEMAED EEVGYVADAA LVTRQLFPQQ AQVALDKSAA EEATASLPRH 120 QWANLSFCRT DPEATEDFHL LRPLQQQPQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180 WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GLDADINFNL SDYDEDLKQM GNLSKEEFVH 240 ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI 300 QCNGREAVTN FEPSIYEGEF IAKAKEDAAH NIDLNLSISP PSVCSSKSIE NPMGIQFNCS 360 PSDASHLKRI KIDHPCTIPV VQPHNIAGNP EHTQIWSNVH PTLFFANEKR GSNKKAEAGF 420 PASFPDWPWN IHGLSPFPLA ASSGFSATPH ATADPSSQPP QSPATAAAPC PFQLRLPASS 480 CHRFFQG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-108 | AP2 family protein |