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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA62648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | AP2 | ||||||||
Protein Properties | Length: 486aa MW: 52875 Da PI: 6.0263 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 163 | 212 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PKA62648.1 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 212 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.6 | 3.2e-13 | 255 | 305 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g PKA62648.1 255 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDSEVEAARAYDQAAIKCNG 305 89********.7******...5...334336**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence |
MMLMLDLNLV SSGESSSAPE KFFAEGSGYG HKDDSGTSNS SVLNAEGSSI IGEEDSYAPP 60 GFRFGILKDD VEGEDEAEVD ECDNGDPSEA CIITRELFPP PHPLAIADGP PPASSSSSSR 120 HHVINLDFCQ ADSPMEGEIG FLHSQPHQPL VKKSRRGPRS RSSQYRGVTF YRRTGRWESH 180 IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN VSDYEEDLKQ MSNLTKEEFV 240 LILRRQSSGF SRGSSKYRGV TLHKCGRWEA RMGQLLGKKY VYLGLFDSEV EAARAYDQAA 300 IKCNGREAVT NFEPSLYQPE LPSKAGCEAA GHEIDLNLSI SQPATSNLKV IDKSMGMELH 360 LGSFVPANGK NIKIDHPACI PIVQPHHLVV APGHSQAWTS TCPVFYTTIE GMAINENAPS 420 APPTPPPSFC SWRINSDSSI PQFAHAASSG FSTINTPPPQ PQLAATAASY HGQLLSPATT 480 HNLFRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-87 | AP2 family protein |