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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA62182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28931 Da PI: 9.5894 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.3 | 7.5e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA EL +LCdaev ++ifsstg+ly++ss PKA62182.1 10 RIDNSTSRQVTFSKRRNGLLKKARELAILCDAEVGLVIFSSTGRLYDFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 85.2 | 1.4e-28 | 73 | 168 | 3 | 98 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 k +++ +++++ +++e+++L+++++nLq+++R+l+Ge+L+ Ls+k+Lq Le++Le sl+ +R kK+++l ++i+el +k +++en++L kk+ PKA62182.1 73 KEQQVTNTTNDVRFWKEEATNLRQQLQNLQENHRKLMGEELSGLSFKDLQTLENRLEMSLRGVRMKKEQILSDEIQELNRKGYLIHQENMELYKKV 168 445555889999*********************************************************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELAILCD AEVGLVIFSS TGRLYDFSST 60 SMKSVIERYT KAKEQQVTNT TNDVRFWKEE ATNLRQQLQN LQENHRKLMG EELSGLSFKD 120 LQTLENRLEM SLRGVRMKKE QILSDEIQEL NRKGYLIHQE NMELYKKVNL LRQENMELYK 180 KVFGSRDSNG EVINSSIIPL AIGMNEESSA AFSLELCQPQ GPQQPINATQ PHDPELGLQL 240 HQGKIQRESS FA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 6e-89 | MIKC_MADS family protein |