PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62057.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 229aa MW: 25943.5 Da PI: 9.1332

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	9.3e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s PKA62057.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	85.2	1.4e-28	84	164	11	91
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +++++s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL+qLe+qL+ slk+iRs+++++l+e + l+++ +e +++n PKA62057.1 84 SRETQSSQQEYLKLKARVEALQRSQRNLLGEDLGPLSSKELEQLERQLDASLKQIRSTREQMLCEANKALKRRLEESSQTN 164 6789**********************************************************************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPEA NIISRETQSS QQEYLKLKAR VEALQRSQRN LLGEDLGPLS 120 SKELEQLERQ LDASLKQIRS TREQMLCEAN KALKRRLEES SQTNPQQVWD PSTAHAVGYG 180 RQAAQAHGDA FYHPLECEPT LQIGYHSDIT IAQVGAPNVS NYMPPGWLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-103	MIKC_MADS family protein