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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA59503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 25945.4 Da PI: 6.8018 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.4 | 3.4e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKA+ELS+LCdaev +iifsstgkl+ yss PKA59503.1 10 KIDNATARQVTFSKRRRGLFKKAQELSILCDAEVGLIIFSSTGKLFQYSS 59 69**********************************************96 PP | |||||||
2 | K-box | 57.5 | 5.9e-20 | 94 | 173 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + a+L k+ +L ++R++ Ged+++L+++eLq++e+ Le +l+++ +kKn+ ++eqi++lq+k +l een +Lr++l+ PKA59503.1 94 DTARLSKQAAELSVQLRNMRGEDIDKLTVEELQKIESSLELGLNRVMEKKNQQIIEQINDLQQKGVKLMEENARLRHRLM 173 6799************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MAREKIKIRK IDNATARQVT FSKRRRGLFK KAQELSILCD AEVGLIIFSS TGKLFQYSSS 60 SMKDVIERRG LHSKNIQQNP DYPSIDLQLD GNADTARLSK QAAELSVQLR NMRGEDIDKL 120 TVEELQKIES SLELGLNRVM EKKNQQIIEQ INDLQQKGVK LMEENARLRH RLMDLKVGMA 180 WAGRSATNDS ENAENTVFED GQSSECISDI SHLGGPQELN ENDNISLKLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 8e-81 | MIKC_MADS family protein |