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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA57200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 194aa MW: 22900 Da PI: 4.9129 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.1 | 1e-22 | 13 | 62 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien ++rq tf kRr g++KKA EL vLCd++ ++++fss+gkly y PKA57200.1 13 KKIENPTQRQSTFYKRRDGLFKKARELAVLCDVDLLLLLFSSSGKLYHYH 62 68**********************************************96 PP | |||||||
2 | K-box | 21.1 | 1.3e-08 | 83 | 172 | 8 | 97 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ e + ++e++ + + e L+re R ++ ++ e+ sl +Lq +e++Le +++k+R + +++++e+l + k+ q+e +L ++ PKA57200.1 83 KVLEDGSGDERREMEEVGRLCEALEREMRFMQVDEKEDYSLADLQMVERNLEAAINKVRGEMETKIHKEMEKLHDMVKQRQQEGYSLCEE 172 555556667788999999999**********************************************************99998888766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MWVIMGRGRM EIKKIENPTQ RQSTFYKRRD GLFKKARELA VLCDVDLLLL LFSSSGKLYH 60 YHSPTVPNVQ ELIERYEKAV EKKVLEDGSG DERREMEEVG RLCEALEREM RFMQVDEKED 120 YSLADLQMVE RNLEAAINKV RGEMETKIHK EMEKLHDMVK QRQQEGYSLC EELSHGSQHE 180 EQESEELDLK LGFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 3e-21 | MIKC_MADS family protein |