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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA57184.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 292aa MW: 32930.4 Da PI: 9.5537 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.3 | 3.2e-31 | 83 | 133 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+ PKA57184.1 83 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 133 79***********************************************95 PP | |||||||
2 | K-box | 76.9 | 5.2e-26 | 153 | 241 | 5 | 93 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 sg+ +e + ++++ qe+akL+ +i+ Lq+ +Rhl+G++L+sL++keL+qLe++Le+++++iRskK+ l + +l+ k e+++e++a PKA57184.1 153 SGSLVEVNSHQYYLQESAKLRHQIQLLQNANRHLMGDGLSSLTVKELKQLENRLERGITRIRSKKEVELQNDNMYLRAKIAETEREQQA 241 333389999**********************************************************************9999998875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence |
MEIGPGRCAS SCARSTRPIG TCERDLSPVA VASCVRVYLQ NKIVIANEPF GPQKNQKNPP 60 VLFCGSSPKL KERSMGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEIALI 120 VFSSRGRLYE YSNNSIKATI ERYKKACADS SNSGSLVEVN SHQYYLQESA KLRHQIQLLQ 180 NANRHLMGDG LSSLTVKELK QLENRLERGI TRIRSKKEVE LQNDNMYLRA KIAETEREQQ 240 ANILQAGADF ALPTFDSRSY YHVNMLEAAS YTHHQEQTAL HLGYESKTDP GS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 6e-94 | MIKC_MADS family protein |