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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA56325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27813.1 Da PI: 9.4396 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRr gi+KKA+ELSvLCda v++++fsstgkl +y+s PKA56325.1 9 KKIENPTNRQVTYSKRRLGIMKKAKELSVLCDAHVSLLMFSSTGKLADYCS 59 68***********************************************96 PP | |||||||
2 | K-box | 48.9 | 2.8e-17 | 95 | 171 | 1 | 73 |
K-box 1 yqkssgksleeakae....slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 yq+++g++l++a++e ++q+ +++Lk+ +++L++e+R++ Ged+e L++ eL+ Leq +e+sl+ +R++K + PKA56325.1 95 YQHATGVDLWNAQYEarsvRMQETMKQLKEVNQSLRKEIRQRTGEDVEGLEMMELRGLEQSIEESLRIVRQRKLKST 171 677777887777766333379****************************************************8765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MGRGRIEIKK IENPTNRQVT YSKRRLGIMK KAKELSVLCD AHVSLLMFSS TGKLADYCSP 60 STKYSIYNFK SMSFLSPTLF LTLLLGSIKG IIERYQHATG VDLWNAQYEA RSVRMQETMK 120 QLKEVNQSLR KEIRQRTGED VEGLEMMELR GLEQSIEESL RIVRQRKLKS TKEANWALMH 180 ELHMKGEIPQ YDLVAEDPTS VYDSTMSMVN VVPRMFAFNV IHPNQQSLQG IDYDSHDLSL 240 R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-46 | MIKC_MADS family protein |