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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA55539.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28034.9 Da PI: 8.5791 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s PKA55539.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 96.6 | 3.9e-32 | 84 | 173 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++++s+qqe+ kLk ++e Lqr+qR+llGedL++Ls +L+qLe+qL+ slk+iRs++++++l+q+ +lq+ke++l e+n++Lr++lee PKA55539.1 84 SRETQSSQQEYLKLKTRVEALQRSQRNLLGEDLGPLSSIDLEQLERQLDASLKQIRSTRTQHMLDQLADLQRKEQMLCEANRSLRRRLEE 173 6789**********************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLRTLERY QKCNFGAPET NIISRETQSS QQEYLKLKTR VEALQRSQRN LLGEDLGPLS 120 SIDLEQLERQ LDASLKQIRS TRTQHMLDQL ADLQRKEQML CEANRSLRRR LEEASCLENP 180 PESWNNPNSA QAVVYGRQTI HTQADDFYHP LVCEPTLQMG YHSDITMASA TVPSVGNFVL 240 PGWLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-108 | MIKC_MADS family protein |