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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA54105.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | AP2 | ||||||||
Protein Properties | Length: 419aa MW: 45868.5 Da PI: 10.0302 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 122 | 171 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g PKA54105.1 122 SQFRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 171 789******************......55*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence |
MWNLNDMPNR EEGVPATPVA EQDSSVVIVE VCGGEPEIVD LSVSGGGSRE ECSSADSEAV 60 PARRFLPAYE LPENARRLQN HHFGLQSPEI AARAAAASQA PKAMEFRQPI KKGRRGPRSK 120 SSQFRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAQAAAR AYDRAAIKFR GADADINFSL 180 KDYEEDVKLT GNFSKEEFVH VLRRQSTGFP RGSSKFRGVT LHKCGRWEAR LGQSMGRKAY 240 DIASIKCNGK DAVTNFDPSI YQKELNPKDE GAGCNLELSL GRSLSSRKME VSKQALIDTN 300 SSWTRNFRPK ICEKLKLLEE ENRRASYLVS SSSFQMNSSP AQSASRQQQR AFAVLPGASN 360 RQPMAPRLPY YGAASGIYRH PAAAAAAAAG STHFFAATTA VAAAAASSGF PNRVVANTR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 2e-76 | AP2 family protein |