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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA53805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26740.3 Da PI: 9.764 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+lyey+ PKA53805.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLYEYA 58 79***********************************************8 PP | |||||||
2 | K-box | 96.8 | 3.4e-32 | 81 | 172 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s +ea++ +++qe++kL ++i nLq+++R+l+G+ +++++++eL+qLe++Le s++kiRskKnell+++ie+lqk+ el+++ ++Lr+k++ PKA53805.1 81 SFSEANSLYYKQEASKLHQQITNLQNSNRNLMGDAVSNMNIRELRQLEKRLEASINKIRSKKNELLYAEIEYLQKRDVELNNDYMYLRNKIA 172 3789999***********************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLYEYANN 60 SVKGTIERYK KASTDISNTG SFSEANSLYY KQEASKLHQQ ITNLQNSNRN LMGDAVSNMN 120 IRELRQLEKR LEASINKIRS KKNELLYAEI EYLQKRDVEL NNDYMYLRNK IADNERAQQH 180 QHMNILPSSS TEYEVMPTFD SRNSLQVHVM DPNSHHSRQQ LTALQLGYII |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-106 | MIKC_MADS family protein |