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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA52357.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21461.7 Da PI: 10.3376 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84 | 8.8e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifs tg+ly+yss PKA52357.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSGTGRLYDYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 82 | 1.3e-27 | 71 | 168 | 3 | 98 |
K-box 3 kssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 k++g+s +++++a +q+e+a+L+++++nLq++qR+l Ge+L+ Ls+k+Lq+Le++Le sl+ +R kK+++l+++i+el +k +++en +L kkl PKA52357.1 71 KAKGEShmTTASEARIWQEEAANLRQQLQNLQENQRKLTGEELSGLSVKDLQNLENRLEMSLRGVRMKKEQILKDEIQELNRKGYLVHQENLELYKKL 168 5555555678899999******************************************************************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVIFSG TGRLYDYSST 60 SMKSVFDRYK KAKGESHMTT ASEARIWQEE AANLRQQLQN LQENQRKLTG EELSGLSVKD 120 LQNLENRLEM SLRGVRMKKE QILKDEIQEL NRKGYLVHQE NLELYKKLNL IQENLELYKK 180 VLNKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-81 | MIKC_MADS family protein |