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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA50368.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28615.9 Da PI: 9.5776 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.8 | 4.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCd+eva+i+fs++gklyeys+ PKA50368.1 9 KRIENKINRQVTFSKRRAGLLKKAFEISVLCDIEVALIVFSTKGKLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 84.1 | 3.1e-28 | 87 | 172 | 13 | 98 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e ++qe+ kLk+++e Lqr+q h++Ge+L+sLs keLqq+eq+Le +l+ iR +Kn+ ll+ i elq ke++l e+n L+kk+ PKA50368.1 87 LQEDMCQEYGKLKSKVEALQRSQSHMMGEKLDSLSTKELQQIEQKLEIALELIRLRKNQSLLDTITELQCKERSLIEQNSVLEKKI 172 4689********************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAFEISVLCD IEVALIVFST KGKLYEYSTD 60 SSMERILERY ERHCYAGKGL MSSQPELQED MCQEYGKLKS KVEALQRSQS HMMGEKLDSL 120 STKELQQIEQ KLEIALELIR LRKNQSLLDT ITELQCKERS LIEQNSVLEK KILQIDKARR 180 MTNQIQWEQQ TQAQPCSSPS TFLLNDTLPI LNIGQYPARI GAAQEDNSAQ PLGRRNGNGL 240 PQWMLRSPT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 4e-76 | MIKC_MADS family protein |