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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA50013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26734.6 Da PI: 10.0211 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.4 | 6e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i n + rqvtfskRr g++KKAeEL +LCdaev +i+fs tgkl+e+ss PKA50013.1 10 KIHNATARQVTFSKRRRGLFKKAEELAILCDAEVGLIVFSATGKLFEFSS 59 699*********************************************96 PP | |||||||
2 | K-box | 65.1 | 2.5e-22 | 90 | 172 | 18 | 100 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++a L k++++ r++R++ GedL+ L+++eLq+Le+ Le++l+++ skK + +++qi++l+kk +l enk+Lr++++e PKA50013.1 90 NGNHAMLSKQVQEATRQLRNMRGEDLQGLNIEELQKLEKTLETGLSHVLSKKGQQIMDQINHLRKKGMQLLAENKRLRQQMAE 172 5567899*************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MAREKIQIRK IHNATARQVT FSKRRRGLFK KAEELAILCD AEVGLIVFSA TGKLFEFSSS 60 SLSEIIEKHK MHSKDPPKPN QPSLDLQLEN GNHAMLSKQV QEATRQLRNM RGEDLQGLNI 120 EELQKLEKTL ETGLSHVLSK KGQQIMDQIN HLRKKGMQLL AENKRLRQQM AEISKMGKQV 180 VADSDRVNYE EGQSSESVTN LTHAGPPHES HDNDYSSDTS LRLGKKILVS SLVLGRC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-70 | MIKC_MADS family protein |