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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA49721.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 273aa MW: 31657.1 Da PI: 9.1698 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.4 | 1.3e-30 | 39 | 89 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e++s PKA49721.1 39 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGRLFEFCS 89 79***********************************************96 PP | |||||||
2 | K-box | 102.9 | 4.2e-34 | 110 | 203 | 8 | 100 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s + ++++++ +qe+ kLk+++e Lqr+qR+llGedL++Ls keL+qLe+q+e slk+iRs+K++l+l+q+ +l++ke++lqe+nkaL+kkl+e PKA49721.1 110 SmVPSKETQNTYQEYLKLKARVEYLQRSQRNLLGEDLGQLSTKELEQLENQVEMSLKQIRSTKTQLMLDQLCDLKRKEQMLQEANKALKKKLQE 203 3477899************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence |
MVRVREREKE RERERERERE EKEKLEKKGK MGRGRVELKR IENKINRQVT FAKRRNGLLK 60 KAYELSVLCD AEVALIIFSN RGRLFEFCSS SSMTQTLERY QTCSYNAGES MVPSKETQNT 120 YQEYLKLKAR VEYLQRSQRN LLGEDLGQLS TKELEQLENQ VEMSLKQIRS TKTQLMLDQL 180 CDLKRKEQML QEANKALKKK LQEDGPEIPL QLSWPSGSGS RGSGEHEPQS DAFFQPLTCD 240 PSLQIGYTPL CTDQRLNAGL STHNINGFIP GWM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 3e-96 | MIKC_MADS family protein |