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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA49643.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | AP2 | ||||||||
Protein Properties | Length: 224aa MW: 24395.6 Da PI: 11.1172 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.6 | 2.6e-07 | 38 | 56 | 2 | 21 |
AP2 2 gykGVrwdkkrgrWvAeIrd 21 +y+GVr+++ +g+++AeIrd PKA49643.1 38 RYRGVRRRP-WGKYAAEIRD 56 8********.********** PP | |||||||
2 | AP2 | 61.5 | 1.9e-19 | 120 | 171 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd ++ +r++lg+f+taeeAa+a+++a+ +++g+ PKA49643.1 120 RYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFDTAEEAAAAYDRAAFRMRGA 171 8********.**********....33236**************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MILFEILTEA SAMASSGGGA SKAEGAAKRA YRPPTIKRYR GVRRRPWGKY AAEIRDSARH 60 GARHDSTGPS HPLPLNENDS QEMILFEILT EASAMASSGG GASKAEGAAK RGYRPPTIKR 120 YRGVRRRPWG KYAAEIRDSA RHGARVWLGT FDTAEEAAAA YDRAAFRMRG AKALLNFPPG 180 AVIGDAAGGW MMEGGSWREG KKGVAPRAQR ERERVLEERR VNGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-20 | ERF family protein |