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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA48020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26844.1 Da PI: 9.4235 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100 | 9.2e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ PKA48020.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 81.3 | 2.2e-27 | 75 | 143 | 1 | 69 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 y+++ ++++ ++++++++qe++kLk++ e+Lqr++RhllGedL++Ls+keLqqLe+qLe++l++ R++K PKA48020.1 75 YNSQATNNVVARDTQNWYQEVTKLKAKFESLQRSHRHLLGEDLGPLSVKELQQLERQLESALSQARQRK 143 5666677799999*******************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSA 60 GSTSKTLERY QSCCYNSQAT NNVVARDTQN WYQEVTKLKA KFESLQRSHR HLLGEDLGPL 120 SVKELQQLER QLESALSQAR QRKVVAKFVL FLIQINCLNL VIIIWSTLIL KEVNDITYLA 180 FNYLICMYQI AYSSSFISPS PYGLLDLLPF QCYNFHVFEG KIIDCNRTSF YY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 3e-69 | MIKC_MADS family protein |