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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA47147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 28811.2 Da PI: 10.0336 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82 | 4e-26 | 32 | 80 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n+ rqvtfskRrng+lKKA EL +LCdaev +i+fsstg+ly++ PKA47147.1 32 RIDNSATRQVTFSKRRNGLLKKARELAILCDAEVGLIVFSSTGRLYDFT 80 8**********************************************96 PP | |||||||
2 | K-box | 84 | 3.3e-28 | 100 | 192 | 7 | 98 |
K-box 7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +s +++++ + +q+e+ L+++++nLq+++R+l+Ge++++Ls keLq+Le+qLe+sl+ iR kK+e+l ++++el +k + +++en++L+k + PKA47147.1 100 VSpNANSEIKVWQKEAVSLRQQLHNLQENHRQLMGENISQLSAKELQHLENQLETSLRAIRLKKEEVLSDEVQELIHKVNLVHQENTELHKTI 192 445788999*********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MKGISDLLLA LHCRSRGRKG RGMGRGKIAI RRIDNSATRQ VTFSKRRNGL LKKARELAIL 60 CDAEVGLIVF SSTGRLYDFT NTSMKSVIER YNKAKEDHGV SPNANSEIKV WQKEAVSLRQ 120 QLHNLQENHR QLMGENISQL SAKELQHLEN QLETSLRAIR LKKEEVLSDE VQELIHKVNL 180 VHQENTELHK TINISTKENM DLCKKLRGQA GVSNSTGLLR PCSEDLILFE ICQPKKQTRV 240 VETDKLNLEL CLH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 26 | RGRKGRGMGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-77 | MIKC_MADS family protein |