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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_09.541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 483aa MW: 54131.9 Da PI: 9.7842 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.4 | 2.1e-14 | 100 | 159 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g evm.model.AsparagusV1_09.541 100 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 159 57*******************666664478446**********99*************98 PP | |||||||
2 | AP2 | 47.4 | 4.9e-15 | 202 | 253 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm.model.AsparagusV1_09.541 202 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 253 57****************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence |
MINDWLFGTS RAKSARLFSR MGIWREPAVL WWLAAGNPQS LSLSMRPGRS RARRCRLWQW 60 LRGWSGGRGR EGDWRGLDAQ TGAIEAVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD 120 NSCRREGQTR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPISN YEKELEEMKH 180 MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA 240 AEAYDIAAIK FRGLNAVTNF DMSRYDVNSI LESSTLPIGG AAKRLKDASS SGHTTDTLTN 300 GRNTDINAHI ATSQLTTVDG INSYNWPTIA FQQAQAQPYH YSNYGQAQAW CKQEQDLQQL 360 HLNNNTHNFF QPYNLMSTMD SSSMEHSTGS NSVMYNGSYN GGYVMPISTM VVDQSNGNQG 420 SSSFGGESEN ILGVSDPYSG GRSVYYPTGV VKDNGNYDQN GWMARSSSNN VGAPLFTVWN 480 DA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 1e-128 | AP2 family protein |