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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_08.558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 308aa MW: 35548.6 Da PI: 7.6155 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.5e-16 | 110 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg+f t eeAa a++ a+ +++g evm.model.AsparagusV1_08.558 110 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFSTQEEAAHAYDIAAIEYRG 161 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence |
MQIKSEENSS KRRTIEYALE HTERGKIVKR RRRQPPATVC VNVYLGAYDE EESAARSYDL 60 AALKYWGPST FTNFPISDYE REFQAMLNVT KEEYLASLRR KSSGFSRGVS KYRGVARHHH 120 NGRWEARIGR VFGNKYLYLG TFSTQEEAAH AYDIAAIEYR GINAVTNFDL RTYIKWLRPE 180 SYSNDVNIHR DTISNKCQLQ DIQLPNNPFL TCNTEPIPQY NLFTGDEFLP RQISSSKTSV 240 TALGLLLKSS IFRQLMEKNG SIISEEISRD DDKDQVDGLR DQSFLDGGED LQHFYAQNED 300 SRLYVRY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 33 | KRRTIEYALEHTERGKIVKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-66 | AP2 family protein |