PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.3437

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

AP2

Protein Properties

Length: 386aa MW: 42878.7 Da PI: 8.5688

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.3437	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.9	4.4e-17	56	105	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g evm.model.AsparagusV1_08.3437 56 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 105 78*****************......55**********************997 PP
2	AP2	41.8	2.6e-13	148	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g evm.model.AsparagusV1_08.3437 148 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKNNG 198 79******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MVFDLNLSSP EDLSVDSGTS NSSSSFSLLD LSLMGCDSRQ QQAMKRSRRG PRSRSSQYRG 60 VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNISDYEDD 120 LKHMKNLTKE EFVHILRRQS NGFARGSSRY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD 180 SEIEAARAYD KAAIKNNGSE AVTNFDPTTY DGEILPETDN SGITVSGLNL DLELKISQPN 240 SHNPNRDDNS LGVQFDPGPY EASDSRNARV TSQLVANPSS LAAAPMQSHV WSASYPVFFP 300 IDEEGAPRKQ PEWGMQALPT WGWQMHRQTP LPLLPCAASS GFSTNLVTAT TYSPHLQLPP 360 PSLSNAARRH LQFSHSPSSS GHFKK*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MVFDLNLSSP EDLSVDSGTS NSSSSFSLLD LSLMGCDSRQ QQAMKRSRRG PRSRSSQYRG  60
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNISDYEDD  120
LKHMKNLTKE EFVHILRRQS NGFARGSSRY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD  180
SEIEAARAYD KAAIKNNGSE AVTNFDPTTY DGEILPETDN SGITVSGLNL DLELKISQPN  240
SHNPNRDDNS LGVQFDPGPY EASDSRNARV TSQLVANPSS LAAAPMQSHV WSASYPVFFP  300
IDEEGAPRKQ PEWGMQALPT WGWQMHRQTP LPLLPCAASS GFSTNLVTAT TYSPHLQLPP  360
PSLSNAARRH LQFSHSPSSS GHFKK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	2e-93	AP2 family protein