PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.1736

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

AP2

Protein Properties

Length: 383aa MW: 43093.9 Da PI: 7.8997

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.1736	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.7	2.5e-17	62	111	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g evm.model.AsparagusV1_08.1736 62 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 111 78*****************......55**********************998 PP
2	AP2	42.2	2e-13	154	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g evm.model.AsparagusV1_08.1736 154 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTETEAARAYDKAAIKCNG 204 79******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MMFNLNDSPN EEEIEGLGLS IANGSESAVT RQFFPVPEPP TEQISQQPTI KRTRRGPRSR 60 SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GLEADINFTL 120 EDYQDDVKQI GNLTKEEFVH MLRRQSTGFP RGSSKFRGVT LHKCGRWEAR MGQFLGKKYV 180 YLGLFDTETE AARAYDKAAI KCNGKDAVTN FDPSTYQDEL NCDSSNGDQT LELSLGSSGS 240 KRGNLDQIDE ESSVGIDQRV PMVFESDWKT SDRNTRIKFD HKLKLPEEDS RADFANMCEM 300 KGRKMKDFLS IPNNSSYRYL QFNQSQYHQL PTNSEGSQVG GXXXXAPPQL PATSFAASSG 360 FSPQPKSAPS WLHKNGFNSK LD*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MMFNLNDSPN EEEIEGLGLS IANGSESAVT RQFFPVPEPP TEQISQQPTI KRTRRGPRSR  60
SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GLEADINFTL  120
EDYQDDVKQI GNLTKEEFVH MLRRQSTGFP RGSSKFRGVT LHKCGRWEAR MGQFLGKKYV  180
YLGLFDTETE AARAYDKAAI KCNGKDAVTN FDPSTYQDEL NCDSSNGDQT LELSLGSSGS  240
KRGNLDQIDE ESSVGIDQRV PMVFESDWKT SDRNTRIKFD HKLKLPEEDS RADFANMCEM  300
KGRKMKDFLS IPNNSSYRYL QFNQSQYHQL PTNSEGSQVG GXXXXAPPQL PATSFAASSG  360
FSPQPKSAPS WLHKNGFNSK LD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67180.1	1e-101	AP2 family protein