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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.362 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 471aa MW: 51905.3 Da PI: 7.2535 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 149 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g evm.model.AsparagusV1_07.362 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*******************......55************************997 PP | |||||||
2 | AP2 | 42.1 | 2.1e-13 | 241 | 291 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g evm.model.AsparagusV1_07.362 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 291 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence |
MKLEIQARGD QRWGSSLRRE IGDELEIGDE LEDRDRSNAG SEXXXXSGTS NSSVLNAEIS 60 SPAGEEESCS TRTLGLQFGI LRSNRDEEEA EGFVTKELFP AAASSSSSSS SRAAHWADLG 120 LQHVQATGQH VMPQQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVD ADINFNLSDY DEDLKQMRNL TKEEFVHILR RQSTGFSRGS 240 SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEIEAAR AYDKAAIKCN GREAVTNFEP 300 SSYEGEMLPE PDSEAIGHDL DLNLRISQPN VSSPKKSDSS MGVQFHFGSL EASDPKKARV 360 ENHPSILGGQ PHSSAMTSEH PQAWSALYPT LYSSREDRAA EKRPIVSSAI PNWTWPLHGS 420 SSTLPLFSSA ASSGFAATTS TTSAATAPPP PPTAHHLQFP PPTTNYYSRN * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-118 | AP2 family protein |