![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_07.1224 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 365aa MW: 40490.3 Da PI: 9.9518 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.3 | 2.5e-15 | 31 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g evm.model.AsparagusV1_07.1224 31 SVFRGVTRHRWTGRYEAHLWDnTCRrEGqkRKgRQVYLGGYDKEEKAARAYDLAALKYWG 90 689******************665564475337*************************98 PP | |||||||
2 | AP2 | 51.8 | 2.1e-16 | 133 | 184 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+fgt+ eAa+a++ a+ k++g evm.model.AsparagusV1_07.1224 133 SVYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGTEAEAAEAYDVAAIKFRG 184 78****************988532...5**********99************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 365 aa Download sequence |
MEVMKEAKAK AKGTAMTTKA MKVVGSGQRS SVFRGVTRHR WTGRYEAHLW DNTCRREGQK 60 RKGRQVYLGG YDKEEKAARA YDLAALKYWG PSAPTNFPVD RYYNEIEIMQ NMTKQEFIAS 120 IRRNSSGFSR GASVYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFGTEAE AAEAYDVAAI 180 KFRGCNAVTN FALSRYNVEA IANSELPVGT SAKRMQQQKA LQPKTSMTAI TSTELSTRAL 240 PERTKQSAHG NNSPFLTITS VNKTICNWAT GNFQTNGAPQ QTMESSNALE HPNNDPYASV 300 HNLFQLQSST VDQSSISLAY YNMDDASSDP CGQNFCWPLV NSQHTRQVHC GTLAQGTELL 360 RLTS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65510.1 | 1e-103 | AP2 family protein |