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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.3259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 980aa MW: 107651 Da PI: 8.3956 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.2 | 1.5e-16 | 72 | 121 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g evm.model.AsparagusV1_05.3259 72 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 121 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.7 | 2.8e-13 | 164 | 214 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g evm.model.AsparagusV1_05.3259 164 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 214 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 980 aa Download sequence |
MWDLNGSPKR MGDPVTFQFF PVSEPAEDGI QGGEITAVAP RAHWAGVKFV EKAADVSPAV 60 KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR 120 GVEADINFTL SDYEDDLKQM ANLTKEEFVH VLRRQSTGFP RGSSKYRGVT LHKCGRWEAR 180 MGQFLGKKYV YLGLFDTEVE AARAYDKAAI KCNGKDAVTN FDPSIYESEL SCNGSQSDHN 240 LELSLGSLSS KRTSVEPMDE EGSVGMDQRA PMDEFDWKRN TRPKFPSNND ISVTGGGGLS 300 LSIGSEQTPL SSKLLAANTA ASSGFPPQHR SKAQKQIGRE RDSGGHAGVD GGNQFPSTSL 360 YVGDLEPNVT DAQLYDMFSQ IGQVVSVRVC RDITTRRSLG YAYVNYSNPM DAARALDMLN 420 FTPLNGKPIR IMYSNRDPST RKSGAANIFI KNLDKSIDHK ALYDTFSVFG NILSCKVATE 480 PSGQSKGYGF VQFEQEEAAQ NAIEKLNGMC LNEKVVYVGP FLRKQERENT PDKTVFRNVF 540 VKNLSESTTK EELDQIFGEY GTITSSVVMT EGDGKSKCFG FVNFENPEDA ARAVEELNGK 600 KFGDKEWYVG KAQKKSERER ELKGRFEQGV KEAADKFQGV NLYLKNLDDS IGDEKLRELF 660 SEFGTITSCK VMRDPNGISR GSGFVAFSNP EDASRALAEM NGKMIGSKPL YVAIAQRKED 720 RRARLQAQFS QMRPVSMPPN VAPRMPMYAP GAPGLGQQLY YGQAPPALIP PQPGFGYQQH 780 LVPGMRPGGA PMPNFFVPMM QQGQQPQRPG GRRGGGGPVQ QAQHPGPMLP QQMLPRGGRM 840 YRYPTGRNMP DVQMSGVAGG MLSVPYDMGA MPLRDAQPIP IGTLASALAN ASPEQQRTML 900 GESLYPLVDQ LEHESAAKVT GMLLEMDQTE VLHLLESPEA LKAKVAEAMD VLRTVAQQQQ 960 AGTATDQLAS LSLNDGIIS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 810 | 817 | GGRRGGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 1e-110 | AP2 family protein |