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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.78 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 198aa MW: 22555.2 Da PI: 7.1359 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.5 | 2.8e-12 | 21 | 71 | 10 | 55 |
AP2 10 kkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 k++g+++A+++d s+ g ++ k+++lg+++++e+Aa+a++ a++k++g evm.model.AsparagusV1_03.78 21 KWSGKFEAHLWDnTSQvEGrkRKgKHVYLGSYDSEEKAARAHDLAALKYWG 71 889*********666696675336*************************98 PP | |||||||
2 | AP2 | 54.1 | 3.7e-17 | 117 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++k +g+W A+I + g r k ++lg+f+t+eeAa+a++ a+ +l+g evm.model.AsparagusV1_03.78 117 AYRGVTRRK-DGKWQARIGRV---GeSRdaKDIYLGTFDTEEEAAEAYDLAAIELRG 169 69****999.9*******998...443347*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MYDFCTFWKN GMSCEIDCRL KWSGKFEAHL WDNTSQVEGR KRKGKHVYLG SYDSEEKAAR 60 AHDLAALKYW GPTPSAKLNF PVSDYERELE TMKNMSQDEY VAHVRRQSSC FSRGASAYRG 120 VTRRKDGKWQ ARIGRVGESR DAKDIYLGTF DTEEEAAEAY DLAAIELRGV HAVTNFDMSN 180 YCDVKPSNLH CAIHPDC* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-61 | AP2 family protein |