PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.767
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family AP2
Protein Properties Length: 518aa    MW: 57672.9 Da    PI: 6.9218
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.767genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-16233292155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  evm.model.AsparagusV1_03.767 233 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDMAALKYWG 292
                                   78*******************988886678446*************************98 PP

2AP248.71.9e-15335386155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  evm.model.AsparagusV1_03.767 335 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 386
                                   57****************999754...5************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    
MSDNTTNWLG FSLSSHLNME QNQTHPTSSA LSSQPQNSLF LSPHFSNSAL CYGVEAENNG  60
ASFYSNQLSV LPLKSDGSLC FMQEGMVASE SPKLEDFLGC GPNMGTHNYS NSEREAMALS  120
LDSMYYSQET EGEENRGQEL NQFSYMQPLH ELYEAPVGDL KNWAPGFGDL QTLSLSMSPG  180
TQSGYAAAQH QISSVSNNEC MALEPRKKRG AGKGEKKQPV PRKSIDTFGQ RTSQYRGVTR  240
HRWTGRYEAH LWDNSCKKEG QSRKGRQVYL GGYDMEEKAA RAYDMAALKY WGPSTHINFP  300
LDSYRDQIEE MQNMTRQEFV AHLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVSGNK  360
DLYLGTFSTQ EEAAEAYDIA AIKFRGLSAV TNFDITRYDV DKITNSNTLL PRELARRIKT  420
IEGNNNVTVA QSSCRELQLI SEQNEYQQFS NNLQGFDDSG KMVNHHLSNS SSLVTSLSSS  480
AEASPDRSGL PMILGKPVNS WGPMGQLPVF AAWADIS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-144AP2 family protein