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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.2339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 532aa MW: 58437.6 Da PI: 7.2868 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.3 | 6.1e-16 | 197 | 256 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g evm.model.AsparagusV1_03.2339 197 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 256 789******************988886678446*************************98 PP | |||||||
2 | AP2 | 47.2 | 5.7e-15 | 299 | 350 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm.model.AsparagusV1_03.2339 299 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 350 57****************988532...5*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence |
MPIKSDGSLC IMEALSRSQH QGMVQSQSPK LEDFLGCSGP NIGAHHQYGG NDRETTTTAT 60 SASASTMYYS QNQEALDLLQ TQQQYFHPLQ HMYHHHHQEL GGEDDGFSSS IKNWASVGGM 120 GYGDLHSLSL SMSPGSQSSY VAATQHSVAS DHSGVAAVAA EAMPLDVVVA KKRGNGKGGQ 180 KQPVHRKSID TFGQRTSQFR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QVYLGGYDME 240 EKAARAYDLA ALKYWGPSTH INFPLENYNQ ELEEMKNMSR QEYVAHLRRK SSGFSRGASI 300 YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDVAAIKFRG ASAVTNFDIT 360 RYDVEKIMAS NTLLSGENAR RVKSIEADIV NNTTTTESNN NSTSSDWKMA LYESPTQTLQ 420 NSESMVDQDQ PVSVAFHGFI GMETVNYVQG IDESGKMAGT HISNPSSLVT SLNSSREGSP 480 DRNGLSVVYS KGEPQFNVGS SPSLGSWMPS TQIRTAISMA HMPMFAAWSD A* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-130 | AP2 family protein |