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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.1208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 534aa MW: 59716.6 Da PI: 6.9025 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.2 | 5.6e-15 | 265 | 324 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g evm.model.AsparagusV1_03.1208 265 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 324 78*******************655454478446**********99*************98 PP | |||||||
2 | AP2 | 46 | 1.3e-14 | 369 | 418 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm.model.AsparagusV1_03.1208 369 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418 9***************988532...5************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence |
MDRQMSTWLG FSLSSAPALS NQNQDETFSN HQSSNNNENS SNPPLTVMPL NSDGSICFLD 60 PNFRPHNHHV DADTSDWRYG GSNEETRGPK LEDFLGGYSD NTNEDNQIQS PRPLSPINEF 120 YYQNPNPTEI NVNIPPCFSP SEGRDPQDSN IHNPYHFLNS YQYPQLQMPN HNHNPIDSCQ 180 TSLSGLKSWL RQNPYPSAPD KPSHESNVQA LTLSMSPGLI AESSQILVAE PLQVAVDNRK 240 RPAAKAGNRD SGPRKSIETF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQV 300 YLGGYDKEDK AARAYDLAAL KYWGPTTHIN FPLSTYEKEL EEMKNMTRQE FVAHLRRKSS 360 GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN 420 AVTNFDISRY DVKRICSSSH LIAGDLAKRN SPKSTDSSEP KSLELPSSNS AGTPEDLTNM 480 AWDPSRAEPG SNGTDQASHG VSLEGKSTEC GEYMAQGYLF PKTLGPMFAL WNE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-131 | AP2 family protein |