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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_02.557 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23284.8 Da PI: 8.2277 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.4 | 1.1e-24 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n rqvtf+kRr+g+lKKA+ELSvLCda++ +ii+s +gkl+e evm.model.AsparagusV1_02.557 10 RIQNPVHRQVTFCKRRAGLLKKAKELSVLCDADIGIIIYSAQGKLFEL 57 89*******************************************996 PP | |||||||
2 | K-box | 64.9 | 2.8e-22 | 83 | 172 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 e+++ +++q+e++ Lk+ei+ Lq+ +R + G++ ++ ++l eLq Le++Le + +iRs+K+++++++i+ l++ke l+ evm.model.AsparagusV1_02.557 83 EASQPQEMQHEISMLKDEIDFLQKGLRYMFGQGtVGHMTLDELQTLERHLEIWMYHIRSTKMHIMFQEIQSLKNKEGILKT 163 67889**************************96499********************************************* PP K-box 90 enkaLrkkl 98 +n+ L++k+ evm.model.AsparagusV1_02.557 164 ANEILQEKI 172 *******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MPRGKVQLRR IQNPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGIIIYSA QGKLFELATN 60 GAMQDLIQRY TGTRGEFQVE GGEASQPQEM QHEISMLKDE IDFLQKGLRY MFGQGTVGHM 120 TLDELQTLER HLEIWMYHIR STKMHIMFQE IQSLKNKEGI LKTANEILQE KIIKQNGFFD 180 EGSTTGDIGY GYPLTIQNGI FNF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 9e-68 | MIKC_MADS family protein |