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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_02.1286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 257aa MW: 28956 Da PI: 8.9737 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.2 | 1.5e-11 | 9 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d +n ++k+ + g ++ +e Aa+ ++ a++k++g evm.model.AsparagusV1_02.1286 9 SIYRGVTRHRWTGRYEAHLWDKGWNPlQNKKGRQGGYDEEEAAARTYDLAALKYWG 64 57*******************767667776666688***9**************97 PP | |||||||
2 | AP2 | 52.4 | 1.4e-16 | 107 | 159 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++++grW+A+I + k+ +lg++ t+eeAa+a++ a+ ++g+ evm.model.AsparagusV1_02.1286 107 SKYRGVARHHQNGRWEARIGRvV-----GqKYLYLGTYSTEEEAARAYDIAAIHYRGH 159 89****************99955.....34*************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MLANGKRSSI YRGVTRHRWT GRYEAHLWDK GWNPLQNKKG RQGGYDEEEA AARTYDLAAL 60 KYWGLQATLN FPAENYVKEY AEMQKMSKEE YLASLRRKSN GFSRGLSKYR GVARHHQNGR 120 WEARIGRVVG QKYLYLGTYS TEEEAARAYD IAAIHYRGHY AVTNFDISSY VDTPKASPQH 180 QSQPQPQPQV KPEPNANTIP FGIPLDSGNQ SATNAGAVQH PWMPGSDNGV DGGEKATDLF 240 DFFNNPGFED NVENLF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 4e-86 | AP2 family protein |