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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_02.1024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 500aa MW: 54978.4 Da PI: 6.7201 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.3 | 5.1e-15 | 225 | 276 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm.model.AsparagusV1_02.1024 225 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 276 57****************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence |
MNGSSSELSM LVGSMSSNHQ NLTNINIDSN QQPKLEDFLG GGGHSFTADH QNSDDYIIPS 60 NNSTNIDSNN GIGISMIKTW LRNQPVPTLT QQQRESCSAA LVAVAASSQS LSLSMSTGLX 120 XXXFSVRGKQ AEEHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEEKAA RAYDLAALKY 180 WGTTTTTNFP ICNYEKEVEE MKHMTRQEYV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ 240 ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMNRYDV NSILQSSTLP 300 IGGAAKRLKE SPSAPSIATV NDTSINSNLI DRITSYSWPT IAYQHAYHNY ANWQCKPEQD 360 AVVHQNLQDL QQLHLNSNNT HNFFQPIHNL LSLDSSSMEH GTGSNSTVYT GSCVNGGGYV 420 MPISTMVVDQ STGNQGTSSS FGGDSENMLV TAAGDPYTGR STYGYDQNAW MASSNVQGME 480 QRSPDNNIGA PSFTVWNDA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-111 | AP2 family protein |