PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.1024
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family AP2
Protein Properties Length: 500aa    MW: 54978.4 Da    PI: 6.7201
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.1024genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.1e-15225276155
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  evm.model.AsparagusV1_02.1024 225 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 276
                                    57****************988532...5************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    
MNGSSSELSM LVGSMSSNHQ NLTNINIDSN QQPKLEDFLG GGGHSFTADH QNSDDYIIPS  60
NNSTNIDSNN GIGISMIKTW LRNQPVPTLT QQQRESCSAA LVAVAASSQS LSLSMSTGLX  120
XXXFSVRGKQ AEEHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEEKAA RAYDLAALKY  180
WGTTTTTNFP ICNYEKEVEE MKHMTRQEYV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ  240
ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMNRYDV NSILQSSTLP  300
IGGAAKRLKE SPSAPSIATV NDTSINSNLI DRITSYSWPT IAYQHAYHNY ANWQCKPEQD  360
AVVHQNLQDL QQLHLNSNNT HNFFQPIHNL LSLDSSSMEH GTGSNSTVYT GSCVNGGGYV  420
MPISTMVVDQ STGNQGTSSS FGGDSENMLV TAAGDPYTGR STYGYDQNAW MASSNVQGME  480
QRSPDNNIGA PSFTVWNDA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-111AP2 family protein