PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30873.1 Da    PI: 9.0312
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1392genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-3151100150
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  evm.model.AsparagusV1_01.1392  51 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 100
                                    79***********************************************8 PP

2K-box115.45.3e-381202155100
                          K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                    ++   ++ea+++++qqe++kL+++i nLq+++R+l+Ge+L+++sl++L+qLe +Lek+++kiRskKnell+++ie++qk+
  evm.model.AsparagusV1_01.1392 120 NT-GtVSEANSQYYQQEASKLRQQITNLQNSNRNLMGESLSTMSLRDLKQLEGRLEKGISKIRSKKNELLYAEIEYMQKR 198
                                    33.3499************************************************************************* PP

                          K-box  84 ekelqeenkaLrkklee 100
                                    e elq++n++Lr+k++e
  evm.model.AsparagusV1_01.1392 199 EMELQNDNMCLRNKIAE 215
                                    **************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MGAYELIPIS IQLSKFLSLD LSSFPMFLQA TTEPSTLEPK EKMGRGKIEI KRIENTTNRQ  60
VTFCKRRNGL LKKAYELSVL CDAEVALIVF SSRGRLYEYA NNSVKATIER YKKACTDTTN  120
TGTVSEANSQ YYQQEASKLR QQITNLQNSN RNLMGESLST MSLRDLKQLE GRLEKGISKI  180
RSKKNELLYA EIEYMQKREM ELQNDNMCLR NKIAENERAQ QQMNMLPATT SNEYEGMPQF  240
DSRNFLQVNL LDPNHHYSHQ QQTALQLG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-114MIKC_MADS family protein