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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.1392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 269aa MW: 30873.1 Da PI: 9.0312 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.1 | 1.8e-31 | 51 | 100 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ evm.model.AsparagusV1_01.1392 51 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 100 79***********************************************8 PP | |||||||
2 | K-box | 115.4 | 5.3e-38 | 120 | 215 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 ++ ++ea+++++qqe++kL+++i nLq+++R+l+Ge+L+++sl++L+qLe +Lek+++kiRskKnell+++ie++qk+ evm.model.AsparagusV1_01.1392 120 NT-GtVSEANSQYYQQEASKLRQQITNLQNSNRNLMGESLSTMSLRDLKQLEGRLEKGISKIRSKKNELLYAEIEYMQKR 198 33.3499************************************************************************* PP K-box 84 ekelqeenkaLrkklee 100 e elq++n++Lr+k++e evm.model.AsparagusV1_01.1392 199 EMELQNDNMCLRNKIAE 215 **************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence |
MGAYELIPIS IQLSKFLSLD LSSFPMFLQA TTEPSTLEPK EKMGRGKIEI KRIENTTNRQ 60 VTFCKRRNGL LKKAYELSVL CDAEVALIVF SSRGRLYEYA NNSVKATIER YKKACTDTTN 120 TGTVSEANSQ YYQQEASKLR QQITNLQNSN RNLMGESLST MSLRDLKQLE GRLEKGISKI 180 RSKKNELLYA EIEYMQKREM ELQNDNMCLR NKIAENERAQ QQMNMLPATT SNEYEGMPQF 240 DSRNFLQVNL LDPNHHYSHQ QQTALQLG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-114 | MIKC_MADS family protein |