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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | AP2 | ||||||||
Protein Properties | Length: 465aa MW: 52838.5 Da PI: 9.6258 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 60 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g evm.model.AsparagusV1_01.137 60 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 109 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.3 | 3.8e-13 | 152 | 201 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+++GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k evm.model.AsparagusV1_01.137 152 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCS 201 79********.7******5553..2.26**********99**********9865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence |
MGDLVTFQFF PVNGAAEDGI HGGEVTAPRM HWAEVKFVEK AVEVSPAIRK SRRGPRSRSS 60 QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGM EADINFSLSD 120 YDEDMKQMNN LTKEEFVHVL RRQSTGFPRG SSKFRGVTLH KCGRWEARMG QFLGKKYVYL 180 GLFDTEVEAA RAYDKAAIKC SGKYAVTNFD PGMYENESNS IDNITDSQSD HNLELSLGSL 240 SSRRTDLELM DEAYIGVDHQ VPMAYESDWK RNTRPKHKAP TKPWSLPPPP PPLRPRPGMD 300 QRHLAAVPAP PRQIDPARAP AVARVRAASP NLHRTRGDPP GLLLGDYIVN VLCILHLSPI 360 FIHWKYTCIP KELVDHWAHI EALKFRYSIT KAFCIALTLT FFDVFDVPVF WPILVVYFFG 420 IFAITMKGRI RHMMTYKYLP FSTGKQQHYG KKPASTEDET IPMT* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 3e-91 | AP2 family protein |