PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_Unassigned.1036

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 329aa MW: 36327.5 Da PI: 10.6058

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_Unassigned.1036	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7e-06	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H evm.model.AsparagusV1_Unassigned.1036 88 FVCEVCNKGFQREQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	14.1	0.00014	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ evm.model.AsparagusV1_Unassigned.1036 164 WKCEKCSKRYAVQSDWKAHSKTC 186 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
GEKLIKDKIK MASASSSASF FSIAESNHHH APSCRDATVL LSTTASAPNS STAAGPPQKK 60 KRNQPGNPNP DAEVIALSPK TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS 120 TKEVRRKVYL CPEPTCVHHE PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK 180 AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAQESA RLPTNLNTIG LFSNTNNINL 240 GFSQVNPGHL DQGPAASSAA DLLRSSRLGA RCQRLISMPF LATQPPSSPS TLFAVRHDFK 300 KNTKTLHVLC NAQGHPRARS LPQPALSI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-116	C2H2 family protein