PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_10.998
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 340aa    MW: 37129.5 Da    PI: 5.8706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_10.998genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08200219626
                                   -SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                                   C++f + G C+yG+rCkF H+
  evm.model.AsparagusV1_10.998 200 CSYFIA-GNCSYGERCKFVHS 219
                                   997777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MENQDAIDAS IVNMLADPKE ARAGIKEVHF LPFNPVEKRT AITYIDESGK LHRASKGAPE  60
QIIDLCNMTK HAKHKVHKMI DQFADRGLRS LGVARQEVPE ATKESEGAPW QFVGLLPLFD  120
PPRHNSAETI RRALNLGVNV KMITGDQLAI GKETGRRLGM GTNMYPSTIL LGDKNNELDI  180
DELIEKADGF AGVFPVNKTC SYFIAGNCSY GERCKFVHSW FVGDNFSLLT PLQGHQKVVT  240
GIALPLGSDK LYSGSQDEMV RVWDCQSGQC VGVINMGNEV GCMISEGPWI FIGITNSVKV  300
WNTQTSTDLT LDGPVGQVYA LVAGNEMLFA GAQVMNFPL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.19e-64C3H family protein