PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_10.528 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 420aa MW: 46110 Da PI: 8.2945 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 27 | 53 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H+p evm.model.AsparagusV1_10.528 27 PGEPDCAYYMRTGMCRFGMTCRFNHPP 53 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 74 | 98 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ evm.model.AsparagusV1_10.528 74 QPECQYYLKTGTCKFGATCKFHHPK 98 799********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 1e-11 | 120 | 144 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ evm.model.AsparagusV1_10.528 120 EKECAYYLRTGQCKFGNTCKFHHPQ 144 679********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 270 | 295 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ evm.model.AsparagusV1_10.528 270 DQPECQFYMKTGDCKFGAVCRFHHPR 295 689*********************96 PP | |||||||
5 | zf-CCCH | 39 | 1.3e-12 | 315 | 341 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ evm.model.AsparagusV1_10.528 315 PGEPLCIFYSRYGVCKFGPNCKFDHPM 341 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence |
MHYCETLWQM SLRGTGSVEG GQYPERPGEP DCAYYMRTGM CRFGMTCRFN HPPDRNLVIA 60 AERMKGGYPE RVGQPECQYY LKTGTCKFGA TCKFHHPKDK AGIAGRVQLN VLGYPLRPNE 120 KECAYYLRTG QCKFGNTCKF HHPQPSNAMV SLSGSPVYTS VHSPTPAGQQ SYLRTSFVPS 180 PRWQGPSSYA QLILPQGLVQ VPSWNTFSGQ LGLASSSEGQ RTPGSNQYYG TSHQSETAAG 240 EQRAVSYHSG SVPVGQYAMQ TENIFPERPD QPECQFYMKT GDCKFGAVCR FHHPRERFIP 300 APDCVLSPLG LPLRPGEPLC IFYSRYGVCK FGPNCKFDHP MATPMGILAY SLSTSSSPDV 360 PVVRRLLESS AAPPVLTLSS ETHVEAVPGS RRQSLSGDEN IQSEGSHTNQ SIGQVSSFS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-149 | C3H family protein |