PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.273

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 724aa MW: 80236.5 Da PI: 8.1645

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.273	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	50	92	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + +q++++++ + evm.model.AsparagusV1_10.273 50 AWTRQEEENFFNALRQVGKN-FEKITFRVQ-SKNKNQVRHYYYRL 92 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
METQPHVPSQ IQGPQAEDLL INDRGSTAPA TPLVAVNEKP AKKVTRQWAA WTRQEEENFF 60 NALRQVGKNF EKITFRVQSK NKNQVRHYYY RLVRRMNKLL GPGLCLDAKN SKDTIAAMLR 120 WWSLLEKHSC PASKLHLKPR RFKIFLESLE NQLLKDRNKI RRKRPSQGEK YLNVVSATSL 180 PSKALENDVH PVVDIQNTSK VESNGPSQKR NMSANINFSK GELPPARSVR QKRRPAGLVA 240 SAAYRRWEKA AMAGVSLVAD AAEQLERATN GGNCSVDQIR SGQKNIDCAG NNQGHLCPPT 300 LLGTCLHQIK DAVMQPVVKL KLQLFPIDEI TRKALEKDAC NPHLELTLSS RKRISSVLEH 360 LNRKWGSSSI ASGELTLLPY SAQQEDISYR KWTAKDTISS AADVYAAVGS PTIFRLRYGW 420 FSNTEPVMRE TPNVESPGLA QPLAHISEQP MKSSGDLSTP LSSTVIVHEP IPEEPPSDPD 480 DELLGSSALT PTSENRKRTG DGHCSEQQQV SVVDWVDSLT NISIGDLLSE ASRASKSSCG 540 YSSLGKTCPS PQEKPFSSDA FDPVRTQTAS SSMWNAEETC DEFSFRMARA CMSRDSPSNP 600 SIKDHKEIVV SESLFKNHLK VPPKSGDLEV ASEAEKDTSY KEDKDVSPKD INLMDIYWPD 660 SLGPLELEMP SSSRYQGQDV VIGDSNSFGF LGRMISNSLD AFQNFSLFGQ EKSASIHLDT 720 NLS*

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

METQPHVPSQ IQGPQAEDLL INDRGSTAPA TPLVAVNEKP AKKVTRQWAA WTRQEEENFF  60
NALRQVGKNF EKITFRVQSK NKNQVRHYYY RLVRRMNKLL GPGLCLDAKN SKDTIAAMLR  120
WWSLLEKHSC PASKLHLKPR RFKIFLESLE NQLLKDRNKI RRKRPSQGEK YLNVVSATSL  180
PSKALENDVH PVVDIQNTSK VESNGPSQKR NMSANINFSK GELPPARSVR QKRRPAGLVA  240
SAAYRRWEKA AMAGVSLVAD AAEQLERATN GGNCSVDQIR SGQKNIDCAG NNQGHLCPPT  300
LLGTCLHQIK DAVMQPVVKL KLQLFPIDEI TRKALEKDAC NPHLELTLSS RKRISSVLEH  360
LNRKWGSSSI ASGELTLLPY SAQQEDISYR KWTAKDTISS AADVYAAVGS PTIFRLRYGW  420
FSNTEPVMRE TPNVESPGLA QPLAHISEQP MKSSGDLSTP LSSTVIVHEP IPEEPPSDPD  480
DELLGSSALT PTSENRKRTG DGHCSEQQQV SVVDWVDSLT NISIGDLLSE ASRASKSSCG  540
YSSLGKTCPS PQEKPFSSDA FDPVRTQTAS SSMWNAEETC DEFSFRMARA CMSRDSPSNP  600
SIKDHKEIVV SESLFKNHLK VPPKSGDLEV ASEAEKDTSY KEDKDVSPKD INLMDIYWPD  660
SLGPLELEMP SSSRYQGQDV VIGDSNSFGF LGRMISNSLD AFQNFSLFGQ EKSASIHLDT  720
NLS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	1e-162	MYB_related family protein