PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.198

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 426aa MW: 47814.5 Da PI: 6.0219

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.198	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.0008	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ksF + L+ H+rtH evm.model.AsparagusV1_10.198 87 HPCKLCPKSFHSVKALHGHMRTH 109 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MECTFDHEQS NAIEVLRSEE KPVKRNNNLR VKIKLLTPVK HEANESTNYS ITNEQIKEGR 60 DPIILREKEA SSKESPTFEA KEIDNMHPCK LCPKSFHSVK ALHGHMRTHP KEEMKEKEKN 120 EEEFTATFKK IRSNPHIPWY EILKWKSKEE RTLRKQYPPG PITDPEVFEG AKDLMCLYNE 180 GKESNTEIKS QVEDKIDKQV GQDPDVEITA KLSVDTNQDD DNNNEPVAKK IKLVESSKGA 240 YVCGTCSKSF TCHQALGGHA TSHSKDKNKK GEGDDDGLKG DRKKSGDEKK HVCEICSASF 300 TTGQALGGHK RAHYDTDKLK KTKKEVDQVQ NVSEDTDGDL VELPLAIAME GAGQAQTVTE 360 DIGQILSEFP FLNAVEEANQ VRAGNEENGR VFGEPRSAGN HTGLPFVFYL NQPAIWEGEM 420 MYSRV*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MECTFDHEQS NAIEVLRSEE KPVKRNNNLR VKIKLLTPVK HEANESTNYS ITNEQIKEGR  60
DPIILREKEA SSKESPTFEA KEIDNMHPCK LCPKSFHSVK ALHGHMRTHP KEEMKEKEKN  120
EEEFTATFKK IRSNPHIPWY EILKWKSKEE RTLRKQYPPG PITDPEVFEG AKDLMCLYNE  180
GKESNTEIKS QVEDKIDKQV GQDPDVEITA KLSVDTNQDD DNNNEPVAKK IKLVESSKGA  240
YVCGTCSKSF TCHQALGGHA TSHSKDKNKK GEGDDDGLKG DRKKSGDEKK HVCEICSASF  300
TTGQALGGHK RAHYDTDKLK KTKKEVDQVQ NVSEDTDGDL VELPLAIAME GAGQAQTVTE  360
DIGQILSEFP FLNAVEEANQ VRAGNEENGR VFGEPRSAGN HTGLPFVFYL NQPAIWEGEM  420
MYSRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	324	KRAHYDTDKLKKTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43170.1	3e-15	C2H2 family protein