PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.1548

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 780aa MW: 88705.6 Da PI: 6.7525

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.1548	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.5e-21	92	185	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkw 76 +fY+++Ak++GFs+r+++++ + + +t+r+f+C ++g+++++k+++++ +r+r ++r+gC+a +++ k+ +w evm.model.AsparagusV1_10.1548 92 EFYCTFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRSGFPQTKKSDDNRLHRNRRSSRCGCQAYMRIVKRAefdIPEW 171 6*************9998874556679***************9****************98887676789 PP FAR1 77 evtkleleHnHela 90 ++t +++ HnHel+ evm.model.AsparagusV1_10.1548 172 RITGFSNVHNHELF 185 ************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence
MGDDQPPSIK FRGFLGFLRA MRSGSLIESY SSEKSFEKTM QTVDNSIIRV ETSEEIESTE 60 EIPEETILSV PTSVNLVPFI GQRFVSQDAA YEFYCTFAKQ CGFSIRRHRT RGKDGVGRGV 120 TRRDFTCHRS GFPQTKKSDD NRLHRNRRSS RCGCQAYMRI VKRAEFDIPE WRITGFSNVH 180 NHELFRSNEA HELSGYYSIS TDDKSRICMF AKAGLSVRQM LRLLELEKGV KLGCLPFTEI 240 DVRNLLKTFR NADDDNDAID LVSMCKRIKD EDPNFKYEFE IDANNRLEHI AWSYASSVRS 300 YDAYGDVVIF DTTRVLDAYD MILGIWIGVD NHGMNCFFGC ALLRDENVQS FSWALKTFLG 360 FMKGKAPQSI LTDQNVWLKE AISIEMPNTK HAFCIWHVIA KFSDWFSMLL GSQYDNWKTD 420 FLRAYNLEAV EDFEIEWKKM INKYSLHTNK HVAGLYGLRT FWALPYLRCS FFAGMTSTSH 480 AESVSGFIHR FLSAQSKREN FVEHAATIIE PKDQEKGKQK SERRLHKISL KSGSPIESHA 540 ASILTPYAFC KLQEELVLAP QFASFPIEDN CLLVRHHTQV DGGCQVIWKP NEEVISCSCR 600 QFEFSGTLCR HALRVLSASN CFQIPEKYLP SRWRSVSLPV SKENTERVNI LQSMASTLLS 660 ESIDSEECLE VASEQISLAL SRIREISRSS HGLSDVGYGS PSESLIIPEG EDIDGLKIGH 720 ARESYPLGKL KERGGGDEIE MSRKRRRCPA PCCVQFGHDS RDCPMIGSEG LSEDDLGFL*

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence

MGDDQPPSIK FRGFLGFLRA MRSGSLIESY SSEKSFEKTM QTVDNSIIRV ETSEEIESTE  60
EIPEETILSV PTSVNLVPFI GQRFVSQDAA YEFYCTFAKQ CGFSIRRHRT RGKDGVGRGV  120
TRRDFTCHRS GFPQTKKSDD NRLHRNRRSS RCGCQAYMRI VKRAEFDIPE WRITGFSNVH  180
NHELFRSNEA HELSGYYSIS TDDKSRICMF AKAGLSVRQM LRLLELEKGV KLGCLPFTEI  240
DVRNLLKTFR NADDDNDAID LVSMCKRIKD EDPNFKYEFE IDANNRLEHI AWSYASSVRS  300
YDAYGDVVIF DTTRVLDAYD MILGIWIGVD NHGMNCFFGC ALLRDENVQS FSWALKTFLG  360
FMKGKAPQSI LTDQNVWLKE AISIEMPNTK HAFCIWHVIA KFSDWFSMLL GSQYDNWKTD  420
FLRAYNLEAV EDFEIEWKKM INKYSLHTNK HVAGLYGLRT FWALPYLRCS FFAGMTSTSH  480
AESVSGFIHR FLSAQSKREN FVEHAATIIE PKDQEKGKQK SERRLHKISL KSGSPIESHA  540
ASILTPYAFC KLQEELVLAP QFASFPIEDN CLLVRHHTQV DGGCQVIWKP NEEVISCSCR  600
QFEFSGTLCR HALRVLSASN CFQIPEKYLP SRWRSVSLPV SKENTERVNI LQSMASTLLS  660
ESIDSEECLE VASEQISLAL SRIREISRSS HGLSDVGYGS PSESLIIPEG EDIDGLKIGH  720
ARESYPLGKL KERGGGDEIE MSRKRRRCPA PCCVQFGHDS RDCPMIGSEG LSEDDLGFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	743	747	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein