PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.777

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 484aa MW: 53628 Da PI: 6.3026

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.777	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.3e-07	240	261	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H evm.model.AsparagusV1_09.777 240 FCSICGKGFKRDANLRMHMRGH 261 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MEHKLRPNFE ASSGFKNLNQ EQTFSQINPR NPCYNNLEFS NLNHSPNDEA KTPKTPALDW 60 DPRAMLTNLS FLEQRIHQVQ DIVRSIIGQE GQLSSQPTEL AAQQQLVTAD LTCIIIQLIS 120 TAGTLLPSIK NTLISSNPSL GQLGNVINSS PRLVVDPIIG NNYSSQRNEG SSSVGAKVSE 180 YDELIKSLSD CGGEVNEQIH IEDHDVKDSE DGVDGENLPP GSYEVLQLEK EEILAPHTHF 240 CSICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPIKELSS EPMPVKRYSC PFVGCKRNKD 300 HKKFQPLKTI LCVKNHYKRS HCDKSYTCSR CNSKKFSVIA DLKTHEKHCG RDKWLCSCGT 360 TFSRKDKLFG HVALFQGHTP AISMDEPKSS GPSDLGQSQE TMNAIASMDY NNTSFIENSM 420 DDINVLDIKG VDDERGYFSP MNFDSCNFGG FDDFARQFDG AESSFSFLPS GSGNFVPKNG 480 EGR*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MEHKLRPNFE ASSGFKNLNQ EQTFSQINPR NPCYNNLEFS NLNHSPNDEA KTPKTPALDW  60
DPRAMLTNLS FLEQRIHQVQ DIVRSIIGQE GQLSSQPTEL AAQQQLVTAD LTCIIIQLIS  120
TAGTLLPSIK NTLISSNPSL GQLGNVINSS PRLVVDPIIG NNYSSQRNEG SSSVGAKVSE  180
YDELIKSLSD CGGEVNEQIH IEDHDVKDSE DGVDGENLPP GSYEVLQLEK EEILAPHTHF  240
CSICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPIKELSS EPMPVKRYSC PFVGCKRNKD  300
HKKFQPLKTI LCVKNHYKRS HCDKSYTCSR CNSKKFSVIA DLKTHEKHCG RDKWLCSCGT  360
TFSRKDKLFG HVALFQGHTP AISMDEPKSS GPSDLGQSQE TMNAIASMDY NNTSFIENSM  420
DDINVLDIKG VDDERGYFSP MNFDSCNFGG FDDFARQFDG AESSFSFLPS GSGNFVPKNG  480
EGR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-172	C2H2 family protein