PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_09.641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | GATA | ||||||||
Protein Properties | Length: 239aa MW: 26865.9 Da PI: 8.6875 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.8 | 1.1e-16 | 180 | 212 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C +C t +Tp+WR gpdg tLCnaCG++y+ evm.model.AsparagusV1_09.641 180 CGHCMTEETPQWRTGPDGRGTLCNACGIKYKNS 212 9*****************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MLSFETPELD DIVSSKEDAF GEPLCVPDDP LETIQIYPME ELKIFLDVLE TKRVRERENT 60 AGLMRSSQCE DAERVARRRG RPRKRREESV AFVLGQSRNP EESARKRGRP KKGAIDAIHS 120 RGIPKRKRNN NHGKNHAWSV KPPELSLESS AQHVSDDRSS DASSSDEASS PKSSEATRRC 180 GHCMTEETPQ WRTGPDGRGT LCNACGIKYK NSQKINNAVN LSCSNLIRER NRKTVYDD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 84 | RRGRPRK |
2 | 78 | 87 | RRGRPRKRRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-13 | GATA family protein |