PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.541

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

AP2

Protein Properties

Length: 483aa MW: 54131.9 Da PI: 9.7842

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.541	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.4	2.1e-14	100	159	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g evm.model.AsparagusV1_09.541 100 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 159 57*****************666664478446******99***********98 PP
2	AP2	47.4	4.9e-15	202	253	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm.model.AsparagusV1_09.541 202 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 253 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MINDWLFGTS RAKSARLFSR MGIWREPAVL WWLAAGNPQS LSLSMRPGRS RARRCRLWQW 60 LRGWSGGRGR EGDWRGLDAQ TGAIEAVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD 120 NSCRREGQTR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPISN YEKELEEMKH 180 MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA 240 AEAYDIAAIK FRGLNAVTNF DMSRYDVNSI LESSTLPIGG AAKRLKDASS SGHTTDTLTN 300 GRNTDINAHI ATSQLTTVDG INSYNWPTIA FQQAQAQPYH YSNYGQAQAW CKQEQDLQQL 360 HLNNNTHNFF QPYNLMSTMD SSSMEHSTGS NSVMYNGSYN GGYVMPISTM VVDQSNGNQG 420 SSSFGGESEN ILGVSDPYSG GRSVYYPTGV VKDNGNYDQN GWMARSSSNN VGAPLFTVWN 480 DA*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MINDWLFGTS RAKSARLFSR MGIWREPAVL WWLAAGNPQS LSLSMRPGRS RARRCRLWQW  60
LRGWSGGRGR EGDWRGLDAQ TGAIEAVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD  120
NSCRREGQTR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPISN YEKELEEMKH  180
MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  240
AEAYDIAAIK FRGLNAVTNF DMSRYDVNSI LESSTLPIGG AAKRLKDASS SGHTTDTLTN  300
GRNTDINAHI ATSQLTTVDG INSYNWPTIA FQQAQAQPYH YSNYGQAQAW CKQEQDLQQL  360
HLNNNTHNFF QPYNLMSTMD SSSMEHSTGS NSVMYNGSYN GGYVMPISTM VVDQSNGNQG  420
SSSFGGESEN ILGVSDPYSG GRSVYYPTGV VKDNGNYDQN GWMARSSSNN VGAPLFTVWN  480
DA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	1e-128	AP2 family protein