PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.60
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 451aa    MW: 51112.1 Da    PI: 8.9252
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.60genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.34.7e-27103191289
                         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                                  fY +YA ++GFsvr+++s++sk n+++++ +fvCs+eg+++e++    +k+r++ a+ r gCka+l+v ++ d+kw+vtkl+
  evm.model.AsparagusV1_08.60 103 FYIAYAGRIGFSVRIARSRRSKCNESVIMLRFVCSREGFSREKRIIaGKKTRKRAASIREGCKAMLEVIRRGDEKWVVTKLV 184
                                  9**************************************998876546788888999************************* PP

                         FAR1  83 leHnHel 89 
                                  +eHnHe+
  evm.model.AsparagusV1_08.60 185 KEHNHEV 191
                                  *****96 PP
2FAR160.35.9e-19225315291
                         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                                  fY +YA++vGF+ r+++s++s  +++ ++ ++vCs++ +++ ++++ ++ +r  +   + gC+a +++ ++++g+w+v+kl+
  evm.model.AsparagusV1_08.60 225 FYYAYASRVGFEARVRQSRRSLLDESLKMLKLVCSRHRYHSGRDNTgDDGRRLIQDPGKEGCEALFEIIRKDNGVWMVSKLV 306
                                  9*****************************************9999444455578889************************ PP

                         FAR1  83 leHnHelap 91 
                                  leH+Hel+p
  evm.model.AsparagusV1_08.60 307 LEHSHELTP 315
                                  ******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    
MMDGNGNDGS GLIEDHVVME VDSINFWATL AGSPHVHPVD PTVHSVQTHH HHQHHHHHHE  60
QMEPQLELVE QPVRRELFAV ETDPRLEPFL GMEFDSGEAA KTFYIAYAGR IGFSVRIARS  120
RRSKCNESVI MLRFVCSREG FSREKRIIAG KKTRKRAASI REGCKAMLEV IRRGDEKWVV  180
TKLVKEHNHE VGMPSRVHYI ATEIEGEIEP YIGMEFESLE MAKTFYYAYA SRVGFEARVR  240
QSRRSLLDES LKMLKLVCSR HRYHSGRDNT GDDGRRLIQD PGKEGCEALF EIIRKDNGVW  300
MVSKLVLEHS HELTPSPPSK VRCIRSQGEI LVIAKNFSDT LGEECGVELR GNCAEPSSAR  360
YNDLCRDAVR CAREGATSAE LYNLAKDGLQ KTFAEIVSAK QKREQQSLQS FIKSQKKHTK  420
KLGKVTPKKD PSGKNGKRTA PKLSPDNDYR *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.14e-35FAR1 family protein